Israel hands down about 1,000 indictments a year for rock-throwing, according to the Israeli Knesset.
Read: Israel, Palestinians mark one year since Gaza war
Prime Minister Benjamin Netanyahu's right-wing government faced growing calls to take action after the Palestinian protests in 2014 over the Gaza war and the burning alive of a Palestinian teenager in a suspected revenge attack for the killing of three Israeli teens by Palestinian militants.
During the protests, stones were regularly thrown at the city's light railway.
The new legislation was originally promoted by Shaked's predecessor, centrist Tzipi Livni.
Read: Israel frees Palestinian after 56-day hunger strike
The Palestinians seek a state in East Jerusalem, the West Bank and Gaza Strip. U.S.-brokered peace talks between Israel and the Palestinians broke down in 2014.
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