The body of Farkhunda, 27, who was lynched on Thursday by an angry mob in central Kabul, was carried to the graveyard by women amid crowds of men, an AFP reporter said, a rare act of protest in a male-dominated society.
The crowd, shouting "Allah o Akbar" (God is greatest), demanded the government bring the killers to justice.
"This is a crime against this family, a crime against a sister and a crime against humanity," said Bari Salam, a human rights activist.
"All those involved and all those who supported her killing should be brought to justice."
Read: Afghan mob lynches, burns woman to death in Kabul
Farkhunda's father told the media that his daughter had a diploma in Islamic studies and could recite the Holy Quran by heart. He insisted she was not involved in burning the Muslim holy book.
The lynching sparked widespread condemnation at home and worldwide.
President Ashraf Ghani condemned the killing as "heinous" and ordered a commission to investigate the incident.
The United Nations also condemned the lynching and said Farkhunda had "suffered mental illness for many years".
Police said they have arrested eleven people in connection with the incident.
In 2012 the revelation that copies of the Koran had been burnt at the US-run Bagram prison sparked five days of violent anti-US riots and attacks across the country, in which 30 people died.
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