Both teams played a goalless first half, but Pakistan reaped the results in the 54th minute when Nepal scored an own goal, while Pakistan got two penalties in their favour with Mohibullah emerging as the penalty specialist for the country, scoring on in the 59th and 68th minute of the match.
Pakistan U15 team beats India 2-1 after Kaka's 'good luck' message
Mudassar Nazar however sealed the all-important win for Pakistan with a header in the 77th minute.
Pakistan had defeated defending champions India 2-1 in their opening match, while they beat Bhutan 4-0 in their second Group B fixture to qualify for the semi-final.
SAFF U15 football championship: Pakistan ready for Nepal test in semis
Meanwhile, India finished second in the group of three, and lost 4-2 to Bangladesh on penalties after playing 1-1 in full-time in the first semi-final on Thursday.
Pakistan and Bangladesh will now play the final on Saturday, November 3.
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