Morgan, and Alex Hales, informed the selectors before Friday's squad announcement they would not be touring Bangladesh.
Pietersen warns Morgan against Bangladesh no-show
Former Ireland batsman Morgan has won plaudits for overseeing an England revival in 50-over cricket following their embarrassing first-round exit at last year's World Cup. "Eoin has done exceptionally well as captain," national selector Whitaker told reporters at Trent Bridge after announcing the squads for the Bangladesh tour. "Over the last couple of years he's established a really good leadership base. He's down a marvellous job.
"It's slightly disappointing that he's turned this opportunity down, but we expect him to be captain in India."
However, Whitaker, who is also a former England batsman, further added there will be an evaluation at the end of Bangladesh series. "At the same time, we'll review as we do after every series. And all I'll say is, I expect him to be captain in India."
England future not over for Morgan: Gooch
The tour, which begins on September 30 and will include two Tests and three ODIs, had been called into question after an attack on a cafe in Dhaka in July which saw 20 hostages killed, including 18 foreigners.
However, the England and Wales Cricket Board (ECB) gave the tour the go-ahead after an inspection visit to Bangladesh led by team security chief Reg Dickason.
Michael Vaughan, a former England captain, was scathing about Morgan's decision not to travel to Bangladesh. "Morgan has made a huge mistake," Vaughan wrote in his Daily Telegraph column on Monday. "You tell [your team] to be strong so they can go the extra yard. I do not see how he can look them in the eye and ask them to do that in the future."
But wicketkeeper-batsman Jos Buttler, who will captain in the ODI series against Bangladesh in place of Morgan, said he regarded himself as a stand-in skipper and that he expected the left-handed batsman to regain the captaincy for England's three ODIs and three Twenty20s in India in January and February. "He's very much still the captain of the England ODI side," said Buttler of Morgan on Monday. "He's done a fantastic job over the last 18 months, and he's been one of the main reasons, if not the main reason, for the turnaround in fortunes."
"The style of cricket he's got the side playing is something we want to continue and keep playing that brand of cricket. He [Morgan] has made the decision that is right for him and it is not one he has taken lightly...People should respect that."
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